I am having the exact same issue as you have been describing. Hesitation under WOT, but perfectly fine under every other condition. Since I am out of my warranty period I will probably just get it fixed. I do have the extended powertrain warranty (100k miles) since I bought it as a "certified lincoln" but Im afraid to take it in since I have it tuned and have the 3-bar sensor swapped on there and whatnot.
Is there an easy way to check and see which injector might be going bad? How much do injectors for these cars cost and where is the best place to get them? And is it an easy install? (I haven't started looking into this yet....just figured I'd ask and then start searching)