Welcome, Jarrod! The Duratec and the EcoBoost engines start with the same basic parts, but the EcoBoost has different heads, engine management, etc. It is as a result also bigger (wider) than the Duratec, making it difficult for a good fit inside today's cramped engine bays. Maybe with relocation of accessories? Also, you would have to change the transmission to be able to put the power to the ground effectively, or custom build your existing transmission.
All this to say it CAN be done, but it is probably a time- & money-consuming project. SwampRat is working on a custom solution for the Ford Edge, hopefully it will be completed within the next few months, then we will know for sure.
Maybe you could talk to these guys and see:
http://www.supersixmotorsports.com/_pdf/cyclone-tech-v2.pdf