Couple of things......
Meth pumps (all of them, regardless of mfg'er) have a "duty cycle". The pumps typically last 2.5-3yrs in duration. So keep that in mind as it relates to the diaphragm in the pump.
Regardless of no leaks, and being tight as you say, air can still be introduced into the lines, as a result of filling your supply tank/source for meth. Not a lot, but it can/will.
Also, not sure how you verified alt/battery were/are ok, but I have seen on my application, if I drop to a flat 13.0 volts or less (I monitor voltage in my application due to massive audio upgrades) then the system will alternate red/green as you've described.
So the above may all be contributing issues that caused your experience.
Glad Julio was able to rectify it for you though and I will echo same sentiments expressed by you and others, in that Julio is (& has) ALWAYS been super helpful.
I worked with him directly to come up with the check valve for our application many years ago.
Enjoy your ride on the Meth train.
Sent from my SM-N920V using Tapatalk