Definitely wont be crazy until atleast a few revisions, with my AJP tune the first and second rev didn't up the boost enough to cause traction issues, the 3rd one made me almost need new pants due to the increased torque, and ripped tires.
Another thing to note, especially with shifting, is that is is always a bit rough after a retune. After the car settles in they usually soften up.
Also do you have a 13+ or a 10-12? 13+ don't KAM reset on retune, so fuel trims, etc. stay and shift behavior/idle learn also seems to stay. 10-12s OAR resets, fuel trims reset, and learned idle etc. may as well.
If you notice that it has odd idle behavior, do a KAM reset on the SCT device, and then let it idle with AC off until it is warm, then idle with AC on for about 1-2 minutes, and after that drive it a bit.