I went the "I've made a terrible mistake" route with the muffler delete and now chalk it up to a $1000 learning experience. I added two "turbo" mufflers, whatever the hell those are, to where the stock rear mufflers were. So now I have a Magnaflow Crossing Muffler in the middle and two "turbo" mufflers in the rear. No resonator/s.
The results...
Honestly, it sounds pretty freaking good. This is how this car should sound from the factory. I'd prefer a little more noise, but it's a Lincoln, it shouldn't sound like a Mustang. I can hear the turbos way more now too, which is pretty cool. When I put a CAI on there (get your seal figured out AirAid), I'm guessing that the turbos will really whistle. It's pretty subtle, with a little rumble where the drone was, and more of a "euro" sound. I don't know what I'm giving back performance wise, but I will still be married tomorrow, so that is a plus. I'll load some pics and video later. If nothing else, I would have paid $300 for this no problem, so really it's only a $700 learning experience.