well, if it is transmission related, the answer is certainly NOT unplugging the knock sensor. Why? The knock sensor is as vital to Ecoboost function as breathing is to humans!
Instead, I would take a look at tires, tire pressures, etc. If all those look good and the road surface is grippy, then I would check trans fluid level and condition next. If condition looks good, add fluid till it is to the top of the hash mark area and then a pint more. See if the shudder goes away.
Use of a tool like Chassis EARS can help knock coming from various suspension and steering parts as well. Might even be the PTU for all we know ... Usually would be preceded by fluid loss, leaky seals etc. but there is always an exception ...