What kind of noise is it making? If you take the appearance cover off, there should be 2 types of sounds (completely normal): injectors clicking, and valvetrain "clacking" like a diesel engine. There might be some boost sounds, but usually (OEM) they are fairly well dampened.
If you are hearing rattling, and only on startup, you may want to make sure you use the OEM Motorcraft oil filter. If the rattle is prolonged, the VCT solenoids or the timing chain may be worn.
Best to put up a video, if you can. Host on Photobucket or YouTube or similar site. Also check the PCM for any codes that might be set (and not necessarily trigger a CEL).