Any smell of fuel out the exhaust? As pmezzo pointed out, if there are leaky injectors, that can cause fuel to be dumped into the cats. In that case, it is best NOT to drive the SHO. The cats can tolerate some fuel, but dump enough in there, you will have to replace them.
A faulty PCM can fry ignition coils (for example, on the Ford Edge), but not common on the Taurus line.
Did you use a new Ford/Motorcraft injector as replacement? Did the work yourself? It is not unlikely at all that you will have to replace multiple injectors, so be prepared for that.
Is the cyl 6 misfire code the only one you are seeing? If there are more, please list them all.