Another update, I decided to move down to the 2 bar tune. And no difference, I then swapped out the 3 bar sensor for my newer one (from the 3 bar tune) reset the adaptations and it appeared to be gone. I picked up another 3 bar sensor and loaded the 3 bar tune again last night. Unfortunately it's been raining for the last 2 days so I haven't been able to really test it out. Although, I did notice that Torque was reporting 16lbs of max boost before the swap. I don't recall ever reaching that much boost in the past. Once the roads clear up (hopefully tomorrow) I will know better.
The KR has not been effected at all by anything I have done.